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Run HMMER3 search task on remote machines

Running HMMER3 search task on remote machines

Read hmm3 plugin documentation first.

Read overview on distributed computing in UGENE.

To run hmmer3 search task on remote machine you need to do the following:

  • Open sequence and go to 'Tools->HMM3 (Hidden Markov models)->Search HMM signals' in main program menu
    Distributed hmmsearch open dialog
  • You will see HMM3 search dialog. Fill required fields and click 'Remote run...' button
    Distributed hmmsearch dialog
  • You will see Remote machines monitor. You can also add/remove/modify remote machines here.
  • Select a machine to run and click 'Run' button. Only 1 machine can be selected in current version (1.6) of UGENE.
    Distributed hmmsearch remote machines dialog
  • That's all. After task is finished you will see a task report in the task view.

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