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Run Smith-Waterman search on remote machines

Running Smith-Waterman search task on remote machines

Read Smith-Waterman plugin documentation first.

Read overview on distributed computing in UGENE.

To run Smith-Waterman search task on remote machine you need to do the following:

  • Open sequence and click 'Find pattern [Smith-Waterman]' button in sequence view menu.
    Distributed Smith-Waterman open dialog
  • You will see Smith-Waterman search dialog. Fill required fields and click 'Remote run...' button.
    Distributed hmmsearch dialog
  • You will see Remote machines monitor. You can also add/remove/modify remote machines here.
  • Select a machine to run and click 'Run' button. Only 1 machine can be selected in current version (1.6) of UGENE.
    Distributed hmmsearch remote machines dialog
  • That's all. After task is finished you will see a task report in the task view.