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SITECON =E2=80=94 i= s a program package for recognition of potential transcription factor bindi= ng sites basing on the data about conservative conformational and physicoch= emical properties revealed on the basis of the binding sites sets analysis.=
To cite SITECON use the following article= :
=E2=80=9COshchepkov D.Y., Vityaev E.E., Grigorovich D.A., Ignatieva E.V.= , Khlebodarova T.M.SITECON: a tool for detecting conservative conformationa= l and physicochemical properties in transcription factor binding site align= ments and for siterecognition. //Nucleic Acids Res. 2004 Jul 1;32(Web Serve= r issue):W208-12.=E2=80=9D
UGENE version of SITECON provides a tool = for recognition of potential binding sites for over 90 types of trans= cription factors. Also UGENE version of SITECON provides a tool for recogni= tion of potential binding sites basing site alignment proposed by user. For= the detailed method description see the original SITECON site.
Data about used context-dependent conform= ational and physicochemical properties are available in the PROPERTY Database.