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Task Name: = generate-dna
Generates a random DNA sequence with spec= ified nucleotide content
Parameters:
algo - Algor= ithm for generating (using 'GC Content' by default) [String]
content = ;- Specifies if the nucleotide content of generated sequence(s) will be tak= en from reference or specified manually (A, G, C, T parameters) (using 'man= ual' by default) [String]
count - Numb= er of sequences to generate (using '1' by default) [Number]
length - Len= gth of the resulted sequence(s) (using '1000' bp by default) [Number]
a - Adenine = content (using '25' percents by default) [Number]
c - Cytosine= content (using '25' percents by default) [Number]
g - Guanine = content (using '25' percents by default) [Number]
t - Thymine = content (using '25' percents by default) [Number]
ref - Path t= o the reference file (could be a sequence or an alignment) [String]
seed - Value= to initialize the random generator. By default (seed =3D -1) the generator= is initialized with the system time (using '-1' by default) [Number]
wnd-size - S= ize of window where set content (using '1000' by default) [Number]
accumulate -= Accumulate all incoming data in one file or create separate files for each= input. In the latter case, an incremental numerical suffix is added to the= file name (using 'True' by default) [Boolean]
format - Out= put file format (using 'fasta' by default) [String]
split - Spli= t each incoming sequence on several parts (using '1' by default) [Number]= p>
out - Output= file [String]
Example:
ugene ge= nerate-dna --length=3D2000 --a=3D45 --out=3Dtest.fa=20