Date: Thu, 28 Mar 2024 23:47:09 +0700 (NOVT) Message-ID: <434312701.87524.1711644429001@ugene.net> Subject: Exported From Confluence MIME-Version: 1.0 Content-Type: multipart/related; boundary="----=_Part_87523_1609627271.1711644429000" ------=_Part_87523_1609627271.1711644429000 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Content-Location: file:///C:/exported.html
Finds repeats in each supplied se= quence, stores found regions as annotations.
Parameter | Description | Default value |
---|---|---|
Annotate as (required) | Name of the result annotation to mark found repe= ats. | repeat_unit |
Algorithm | Control over variations of the algorithm. | Auto |
Filter nested | Filters nested repeats. | True |
Identity | Repeats identity in percents. | 100 |
Inverted | Specifies to search for inverted repeats. | False |
Max distance | Maximum distance between the repeats. | 5000 |
Min distance | Minimum distance between the repeats. | 0 |
Min length | Minimum length of the repeats. | 5 |
Parallel threads | Number of parallel threads used for the task. | Auto |
Parameters in = Workflow File
Type: repeats-searc= h
Parameter | Parameter in the GUI | Type |
---|---|---|
result-name | Annotate as | string |
algorithm | Algorithm | numeric Available values are:
|
filter-nested | Filter nested | boolean |
identity | Identity | numeric |
max-distance | Max distance | numeric |
min-distance | Min distance | numeric |
min-length | Min length | numeric |
threads | Parallel threads | numeric 0 - for using autodetected threads number |
Input/Output Ports= span>
The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow&nbs= p;File: in-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
And 1 <= /span>output port:
Name in GUI: Repeat annotations
Name in Workflow&nbs= p;File: out-annotations
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table= |