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Extracts annotated regions from i= nput sequence.
Parameter | Description | Default value |
---|---|---|
Annotation names (required= ) | List of annotation names which will be accepted = or filtered. Use space as the separator. | |
Accept of filter | Selects the name filter: accept specified names = or accept all except specified. | Accept |
Complement | Complements the annotated regions if the corresp= onding annotation is located on the complement strand. | True |
Translate | Translates the annotated regions if the correspo= nding annotation marks a protein subsequence. | True |
Extend left | Extends the resulted regions to left. | 0 |
Extend right | Extends the resulted regions to right. | 0 |
Gap length | Inserts a gap of a specified length between the = merged locations of the annotation. | 1 |
Parameters in = Workflow File
Type: extract-annot= ated-sequence
Parameter | Parameter in the GUI | Type |
---|---|---|
annotation-names | Annotation names | string |
accept-or-filter | Accept or filter | boolean Available values are:
|
complement | Complement | boolean |
translate | Translate | boolean |
extend-left | Extend left | numeric |
extend-right | Extend right | numeric |
merge-gap-length | Gap length | numeric |
Input/Output Ports= span>
The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow&nbs= p;File: in-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
Set of annotations | annotations | annotation-table= |
And 1 <= /span>output port:
Name in GUI: Annotated regions
Name in Workflow&nbs= p;File: out-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
Set of annotations | annotations | annotation-table= |