Date: Fri, 29 Mar 2024 19:54:51 +0700 (NOVT) Message-ID: <904450070.89304.1711716891608@ugene.net> Subject: Exported From Confluence MIME-Version: 1.0 Content-Type: multipart/related; boundary="----=_Part_89303_1886838623.1711716891607" ------=_Part_89303_1886838623.1711716891607 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Content-Location: file:///C:/exported.html
Builds a HMM3 profile from a multiple sequence alignment. <= span style=3D"background-color: transparent;line-height: 1.4285715;">The HM= M3 profile is a statistical model which captures position-specific informat= ion about how conserved each column of the alignment is, and which residues= are likely.
Parameter | Description | Default value |
---|---|---|
Random seed | Random generator seed. 0 - means that one-time a= rbitrary seed will be used. | 0 |
Type: hmm3-build
Parameter | Parameter in the GUI | Type |
---|---|---|
seed | Random seed | numeric |
Input/Output Ports= span>
The element has 1 input port:
Name in GUI: Input MSA
Name in Workflow File:<= /strong> in-msa
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
MSA | msa | msa |
And 1 output port:
Name in GUI: HMM3 profile
Name in Workflow File:<= /strong> out-hmm3
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
HMM profile | hmm3-profile | hmm3-profile |