Unipro UGENE User Manual
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Corresponds to the Extended settings section on the main tab.

ParameterUnitDefaultLimitsTool argument nameDescription
Base numbering frequency
10 (len≤50)
20 (51≤len≤300)
50 (301≤len)		[0,1000]LAB_FR

Each image marks the number of the base (nucleotide) starting from the beginning 5'. The frequency with which this number will be displayed on an image depends on this parameter:
if it is 0, then the number will not appear anywhere             Image Modified
if it is equal to 1, then each base will have its own number Image Modified
if it is equal to 2, then each even base will have a number Image Modified
and so on.

Compare images above with the same algorithm settings to see the difference.

Rotation angle°0[-180,180]ROT_ANGSpecifying the orientation of the folded molecule by selecting the rotation angle. Positive values correspond to counter-clockwise.

Region settings

Specifies the part of the sequence that will be analyzed. The tool will only work with this piece of the sequence in isolation from the whole sequence.

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