This sample describes shows how to search for TFBS with a different methods and how to write the results transcription factor binding sites (TFBS) using two different approaches - weight matrices and SITECON models - and write the found TFBS annotations into one output file.First, the workflow reads sequences input by a user. Then, each
The workflow steps are these:
- The workflow reads the input sequences.
- Each sequence goes to the TFBS searching
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- elements.
- Read Weight Matrix reads the input weight matrices. Read SITECON Model reads the input SITECON models. The data are also transferred to the TFBS searching elements.
- Each TFBS searching element produces the corresponding annotations.
- After that the two annotation data flows are multiplexed into one data flow.
- The multiplexed data and are written to the output file ("merged.gb", by default).
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If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation. |
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