To build Bowtie 2 index select the Tools ‣ Align to reference NGS data analysis ‣ Build index for reads mapping item in the main menu. The Build Index dialog appears. Set the Align short reads method parameter to Bowtie 2.
...
To build Bowtie 2 index select the Tools ‣ Align to reference NGS data analysis ‣ Build index for reads mapping item in the main menu. The Build Index dialog appears. Set the Align short reads method parameter to Bowtie 2.
...