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  • PhyML Maximum Likelihood

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There The following parameters are available:

Substitution model parameters -  selection a selection of the Markov model of substitution:

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Number of substitution rate categories - a number of substitution rate categories.

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Branch support parameters - a selection of the method that is used to measure branch support:

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Tree searching parameters - a selection of the tree topology searching algorithm:

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Set number of random starting tree - a number of random starting tree.

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Display tree in new window - displays tree in the new window.

Display tree with alignment editor - displays tree with alignment editor.

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