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External tool | Windows (64-bit) | Windows (32-bit) | macOS (64-bit) | Linux (64-bit) | Linux (32-bit) |
---|---|---|---|---|---|
bedGraphToBigWig | 4 | ||||
bedtools | 2.20.1 | ||||
BLAST | 2.2.26 | ||||
BLAST+ | 2.2.30 | ||||
Bowtie | 0.12.7 | ||||
Bowtie2 | 2.1.0 | ||||
BWA | 0.7.12 | ||||
CAP3 | 12/21/07 | ||||
CEAS | TODO | ||||
CLARK | N/A | ||||
ClustalO | 1.2.1 | ||||
ClustalW | 2.1 | ||||
ConductGO | TODO | ||||
conservation_plot | TODO | ||||
Cufflinks tools | N/A | ||||
Cutadapt | 1.7.1 | ||||
DIAMOND | N/A | ||||
FastQC | 0.11.2 | ||||
JRE (java) | JRE is not included into the External Tools Packages. | ||||
HMMER | 3.1b2 | ||||
Kraken | N/A | ||||
MACS | 1.4.2 | ||||
MAFFT | 7.212 | ||||
MrBayes | 3.2.3 | ||||
peak2gene | 1.02 | ||||
perl | 5.10.0.5 (32-bit) | ||||
PhyML | 20120412 | ||||
python | 2.7.5 | ||||
Rscript | R is not included into the External Tools Packages. However, it may be installed using the UGENE Online Installer package. | ||||
samtools | 0.1.19 | ||||
SeqPos | TODO | ||||
SnpEff | 4.3i | ||||
SPAdes | N/A | ||||
Spidey | Version not specified | ||||
StringTie | N/A | ||||
T-Coffee | 8.99 | ||||
TopHat | N/A | ||||
Trimmomatic | 0.38 | ||||
vcftools | 0.1.12b | ||||
WEVOTE | N/A |