Performes Performers assembly of input short reads.
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Output directory | Directory to save Spades output files. | |
Dataset type | Input dataset type. | Multi Cell |
Running mode | Running mode. | Error correction and assembly |
K-mers | k-mer sizes (-k). | auto |
Number of threads | Number of threads (-t). | 16 |
Memory limit (Gb) | Memory limit (-m). | 250 |
Parameters in Workflow File
Type: spades-id
Parameter | Parameter in the GUI | Type |
---|---|---|
output-dir | Output directory | string |
dataset-type | Dataset type | string |
running-mode | Running mode | string |
k-mer | K-mers | numeric |
threads | Number of threads | numeric |
memlimit | Memory limit (Gb) | numeric |
Input/Output Ports
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