...
External tool | Windows (64-bit) | Windows (32-bit) | macOS (64-bit) | Linux (64-bit) | Linux (32-bit) | |||||
---|---|---|---|---|---|---|---|---|---|---|
bedGraphToBigWig | 4 | N/A | 4 | 4 | N/A | |||||
bedtools | 2.20.1 | 2.20.1 | 2.20.1 | 2.20.1 | 2.20.1 | |||||
BLAST | 2.2.26 | 2.2.26 | 2.2.26 | 2.2.26 | 2.2.26 | |||||
BLAST+ | 2.2.30 | 2.2.30 | 2.2.30 | 2.2.30 | 2.2.30 | |||||
Bowtie | 0.12.7 | 0.12.7 | 1.0.0 | 1.0.0 | 1.0.0 | |||||
Bowtie2 | 2.3.4.3 | 2.1.0 | 2.3.4.3 | 2.3.4.3 | 2.1.0 | |||||
BWA | 0.7.12 | 0.7.12 | 0.7.12 | 0.7.12 | 0.7.12 | |||||
CAP3 | 12/21/07 | 12/21/07 | 12/21/07 | 12/21/07 | 12/21/07 | |||||
CEAS | 1.0.2 | 1.0.2 | 1.0.2 | 1.0.2 | N/A | |||||
CLARK | N/A | N/A | 1.2.4 (UGENE-customized) | 1.2.4 (UGENE-customized) | N/A | |||||
ClustalO | 1.2.1 | 1.2.1 | 1.2.1 | 1.2.1 | 1.2.1 | |||||
ClustalW | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | |||||
ConductGO | Version not specified | Version not specified | Version not specified | Version not specified | N/A | |||||
conservation_plot | 0.1.0 | 0.1.0 | 0.1.0 | 0.1.0 | N/A | |||||
Cufflinks tools | N/A | N/A | 2.0.2 | 2.0.2 | N/A | |||||
Cutadapt | 1.7.1 | 1.7.1 | 1.7.1 | 1.7.1 | 1.7.1 | |||||
DIAMOND | N/A | N/A | 0.9.22 | 0.9.22 | N/A | |||||
FastQC | 0.11.2 | 0.11.2 | 0.11.2 | 0.11.2 | 0.11.2 | |||||
JRE (java) | JRE is not included into the External Tools Packages. | 1.8.0 | 1.8.0 | N/A | N/A | N/A | ||||
HMMER | 3.1b2 | 3.1b2 | 3.1b2 | 3.1b2 | 3.1b2 | |||||
Kraken | N/A | N/A | 1.0 | 1.0 | N/A | |||||
MACS | 1.4.2 | 1.4.2 | 1.4.2 | 1.4.2 | N/A | |||||
MAFFT | 7.212 | 7.212 | 7.212 | 7.212 | 7.212 | |||||
MetaPhlAn2 | 2.0.0 | 2.0.0N/A | N/A | 2.0.0 | 2.0.0 | 2.0.0 | ||||
MrBayes | 3.2.3 | 3.2.3 | 3.2.3 | 3.2.3 | 3.2.3 | |||||
peak2gene | 1.02 | 1.02 | 1.02 | 1.02 | N/A | |||||
perl | 5.24.3 | 5.24.0 | N/A | N/A | N/A | |||||
PhyML | 20120412 | 20120412 | 20120412 | 20120412 | 20120412 | |||||
python | 2.7.5 | 2.7.5 | 2.7.5 | 2.7.5 | 2.7.5 | |||||
Rscript | R is not included into the External Tools Packages. However, it may be installed using the UGENE Online Installer package. | |||||||||
samtools | 0.1.19 | 0.1.19 | 0.1.19 | 0.1.19 | 0.1.19 | |||||
SeqPos | 1.01 | 1.01 | 1.01 | 1.01 | N/A | |||||
SnpEff | 4.3i | 4.3i | 4.3i | 4.3i | 4.3i | |||||
SPAdes | N/A | N/A | 3.12.0 | 3.12.0 | N/A | |||||
Spidey | Version not specified | Version not specified | N/A | Version not specified | Version not specified | |||||
StringTie | N/A | N/A | 1.3.4d | 1.3.4d | N/A | |||||
T-Coffee | 8.99 | 8.99 | 11.00 | 11.00 | 11.00 | |||||
TopHat | N/A | N/A | 2.1.1 | 2.1.1 | N/A | |||||
Trimmomatic | 0.38 | 0.38 | 0.38 | 0.38 | 0.38 | |||||
vcftools | 0.1.12b | 0.1.12b | 0.1.12b | 0.1.12b | 0.1.12b | |||||
WEVOTE | N/A | N/A | Version not specified | Version not specified | N/A |