When you first open UGENE , you see the for the first time, there is an empty UGENE window with the main settings. Using these settings you can run the many algorithms, configure different settings and use the help menu if you need it.
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Now you can select and analyze different files such as sequences, multiple sequence alignments, short reads assemblies and etc. To open a file click to the File-->Open or click to the Open icon and choose the file:
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<center> <img src="/wiki/download/attachments/2523429/pic6.png"/> </center> |
or by the toolbar Show ORFs icon:
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When you choose the building tree parameters in the dialogs the tree appears:
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