To build a new SITECON model call the Tools->SITECON->Build new SITECON model from alignment main menu item. The following dialog will appear:
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<center> <br> <img src="/wiki/download/attachments/8094111/Building new SITECON Model.png"/> <br> </center> |
Here you need to select a nucleotide alignment and an output model. Optionally, you can change other parameters. After that click on the Build button.