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See the list of all available formats here.
Element type: read-sequence
Parameters in GUI
Parameter | Description | Default value | Parameter in Workflow File | Type |
---|---|---|---|---|
Input files | Semicolon-separated list of datasets to the input files. | url-in |
string | ||||
Mode | If the file contains more than one sequence, “split” mode sends them as is to output, while “merge” appends all the sequences and outputs the merged sequence. | Split | mode | numeric Available values are:
|
Merging gap | In the “merge” mode, inserts the specified number of gaps between the original sequences. This is helpful e.g. to avoid finding false positives at the merge boundaries. | 10 | merge-gap | numeric |
Sequence count limit | Split mode only. Read only first N sequences from each file. Set 0 value for reading all sequences. | 0 | sequence-count-limit | numeric |
Accession filter | Only reports a sequence with the specified accession (id). |
numeric
Available values are:
- 0 - for split mode
- 1 - for merge mode
Type: read-sequence
accept-accession |
string |
Input/Output Ports
The element has 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | sequence |
Set of annotations | annotations | annotation-table |
Source URL | url | string |