Finds annotations for the supplied DNA sequence in local BLAST database.
| Warning |
|---|
BLAST is used as an external tool from UGENE and it must be installed on your system. To learn more about the external tools, please, read main UGENE User Manual. |
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Database name (required) | Base name for BLAST DB files. | |
| Database path (required) | Path to the database files. | |
| Tool path (required) | Path to the BLAST executable. | default |
| Search type (required) | Selects the type of the BLAST searches. | blastn |
| Annotate as | Name of the result annotations. | misc_feature |
| Expected value | Expectation threshold value. | 10 |
| Temporary directory (required) | Directory for temporary files. | default |
Parameters in Schema File Workflow File
Type: blast
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| db-name | Database name | string |
| db-path | Database path | string |
| tool-path | Tool path | string |
| blast-type | Search type | string Available values are:
|
| result-name | Annotate as | string |
| e-val | Expected value | numeric |
| temp-dir | Temporary directory | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequence
Name in Schema File Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Schema Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Annotations
Name in Schema File Workflow File: out-annotations
Slots:
| Slot In GUI | Slot in Schema Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |