The element gets message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).
Parameters in GUI
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Element type: write-annotations
Parameters
Parameter | Description | Default value | Parameter in Workflow File | Type |
---|---|---|---|---|
Data storage | Place to store workflow results: local file system or a database. |
data-storage | string | ||
Output file | Location of the output data file. If this attribute is set, slot “Location” in port will not be used. | url-out |
string | |
Output file suffix | This suffix will be used for generating the output file name. |
url-suffix | string | |||
Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). | Rename | write-mode | numeric Available values are:
|
Document format | Document format of output file. | genbank | document-format | string Available values are:
|
Annotations name | Object name of the annotations. | unknown feature | annotations-name | string |
CSV separator | String which separates values in CSV file(s). | ”,” (comma) | separator | string |
Write sequence name | Write sequence to CSV file(s). | False |
Type: write-annotations
write |
numeric
Available values are:
- 0 - for overwrite
- 1 - for append
- 2 - for rename
string
Available values are:
- CSV
- GenBank
- GFF
_names |
boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table-list |
Sequence | sequence | sequence |
Source URL | url | string |