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External tool | Windows (64-bit) | macOS (64-bit) | Linux (64-bit) |
---|---|---|---|
bedGraphToBigWig | 4 | 4 | 4 |
bedtools | 2.20.1 | 2.20.1 | 2.20.1 |
BLAST+ | 2.2.30 | 2.2.30 | 2.2.30 |
Bowtie | 0.12.7 | 1.0.0 | 1.0.0 |
Bowtie2 | 2.3.4.3 | 2.3.4.3 | 2.3.4.3 |
BWA | 0.7.12 | 0.7.12 | 0.7.12 |
CAP3 | 12/21/07 | 12/21/07 | 12/21/07 |
CEAS | 1.0.2 | 1.0.2 | 1.0.2 |
CLARK | N/A | 1.2.4 (UGENE-customized) | 1.2.4 (UGENE-customized) |
ClustalO | 1.2.2 | 1.2.3 | 1.2.4 |
ClustalW | 2.1 | 2.1 | 2.1 |
ConductGO | Version not specified | Version not specified | Version not specified |
conservation_plot | 0.1.0 | 0.1.0 | 0.1.0 |
Cufflinks tools | N/A | 2.0.2 | 2.0.2 |
Cutadapt | 1.7.1 | 1.7.1 | 1.7.1 |
DIAMOND | N/A | 0.9.22 | 0.9.22 |
FastQC | 0.11.2 | 0.11.2 | 0.11.2 |
JRE (java) | 1.8.0 | N/A | N/A |
HMMER | 3.1b2 | 3.1b2 | 3.1b2 |
Kraken | N/A | 1.0 | 1.0 |
MACS | 1.4.2 | 1.4.2 | 1.4.2 |
MAFFT | 7.450 | 7.450 | 7.450 |
MetaPhlAn2 | N/A | 2.0.0 | 2.0.0 |
MrBayes | 3.2.3 | 3.2.3 | 3.2.3 |
peak2gene | 1.02 | 1.02 | 1.02 |
perl | 5.24.3 | N/A | N/A |
PhyML | 20120412 | 20120412 | 20120412 |
python | 2.7.5 | 2.7.5 | 2.7.5 |
Rscript | R is not included into the External Tools Packages. However, it may be installed using the UGENE Online Installer package. | ||
samtools | 0.1.19 | 0.1.19 | 0.1.19 |
SeqPos | 1.01 | 1.01 | 1.01 |
SnpEff | 4.3i | 4.3i | 4.3i |
SPAdes | N/A | 3.1214.01 | 3.1214.01 |
Spidey | Version not specified | N/A | Version not specified |
StringTie | N/A | 1.3.4d | 1.3.4d |
T-Coffee | 8.99 | 11.00 | 11.00 |
TopHat | N/A | 2.1.1 | 2.1.1 |
Trimmomatic | 0.38 | 0.38 | 0.38 |
vcftools | 0.1.12b | 0.1.12b | 0.1.12b |
WEVOTE | N/A | Version not specified | Version not specified |