The HMM3 plugin is a toolkit based on the Sean Eddy’s HMMER3 package.
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- Make the HMMER3 tools accessible to a wider user audience by providing a graphical interface for all supported utilities for most of the platforms.
- Be compatible with the original HMMER3 package.
- Create the a high-performance solution utilizing modern multi-core processors.
The current version of UGENE provides a user interface for three HMM3 tools: HMM3 build, HMM3 search, and Phmmer search.
In the original program, the corresponding commands are: “hmmbuild”, “hmmsearch” and “phmmer”.
To access these tools select the Tools ‣ HMMER3 HMMER tools submenu of the program main menu:
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<center> <br> <img src="/wiki/download/attachments/422769154363788/HMM3HMM2.png"/> <br> </center> |
We highly recommend reading the original HMMER3 documentation to learn how to use utilities provided by the plugin.
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