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  • Gc Content Algorithm Element

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Parameters in GUI

ParameterDescriptionDefault value
Min GC contentMin GC content value in percents.20%
Max GC contentIt is also called E-value. Describes the number of hits one can “expect” to see by chance when searching a database of a particular size.Max GC content value in percents.40%
Min lengthMinimum result length of a region.50bp
Max lengthMaximum result length of a region.1000bp

 

Parameters in Schema File

Type: CDD find-gc

ParameterParameter in the GUIType
keyAnnotate Asstring
evalueExpected valueregion-startMin GC contentnumeric
region-endMax GC contentnumeric
min-lengthlenMin lengthnumeric
max-lengthlenMax lengthnumericpatternPatternstring