The RNA-seq pipeline “Tuxedo” consists of the TopHat spliced read mapper, that internally uses Bowtie or Bowtie 2 short read aligners, and several Cufflinks tools that allows one to assemble transcripts, estimate their abundances, and tests for differential expression and regulation in RNA-Seq seq samples.
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The pipeline is currently available on Linux and Mac OS X systems only. |
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If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation. |
Select Samples tab on the Workflow Designer Palette and double-click on the ChIP-seq analysis with Cistrome tools sample. The following configure wizard appears:
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As soon as the variants calling task is finished, a notification and dashboard will appear. The dashboard will contain information about workflow: input and output files, all information about task.
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The work on this pipeline was supported by grant RUB1-31097-NO-12 from NIAID. |