Workflow Designer Documentation v. 1.17.0
Child pages
  • Align Sequences with MUSCLE

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changes.mady.by.user Olga Golosova

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This workflow performs multiple sequence alignment with MUSCLE algorithm and saves the resulting alignment to Stockholm document. Source data can be of any format containing sequences or alignments.

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Tip
titleHow to Use This Sample

If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.

Workflow Sample Location

The workflow sample "Align Sequences with MUSCLE" can be found in the "Alignment" section of the Workflow Designer samples.

Workflow Image

The workflow looks as follows:

If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.
HTML
<center>
  <br>
  <img src="/wiki/download/attachments/324458516122700/Align sequencesSequences with MUSCLE.png"/>
  <br> 
</center>
Tip
titleHow to Use This Sample
Workflow Wizard

The wizard has 2 pages.

  1. Input MSA(s): On this page you must input multiple alignments file(s). 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/16122700/Align Sequences with MUSCLE_1.png"/>
  <br> 
</center>

  2. Align Sequences with MUSCLE: On this page you can modify MUSCLE and output parameters. 

    HTML
    <center>
  <br>
  <img src="/wiki/download/attachments/16122700/Align Sequences with MUSCLE_2.png"/>
  <br> 
</center>