To export a consensus sequence of the assembly, select either the Export consensus item in the Consensus Area context menu or the Export ‣ Consensus item in the Reads Area context menu.
The Export Consensus dialog appears:
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Modify, if required, the exported sequence name and choose the consensus algorithm.
The consensus is exported with gaps if the Keep gaps check box has been checked.
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The consensus sequence is exported to the file and if the Add to project check box has been checked it is added to the current project and opened.