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More advanced users can use their own scripts to set a parameter’s value, read chapter Using Script to Set Parameter Value to learn more.

When you select an input or output port on the Scene the Property Editor shows the slots of the port. You can configure slots of a connected input port by selecting different (matching) data available through the dataflow. For example on the image the Write alignment element can access MSA data from both previous elements:

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However, it doesn’t make sense to select MSA (by Read alignment) value in this case, as the data read from the input file would be written to the output file instead of the aligned MSA data, i.e. MSA (by Align with ClustalW).

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