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  • Merge BAM Files Element

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Merge BAM files using SAMTools merge.

Parameters in GUI

ParameterDescriptionDefault value
Output directorySelect an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file. 
Custom directoryCustom output directory. 
Output BAM nameA name of an output BAM file. If default of empty value is provided the output name is the name of the first BAM file with .merged.bam extention. 

Parameters in Workflow File

Type: merge-bam

ParameterParameter in the GUIType
out-modeOutput directorynumeric
custom-dirCustom directory

string

out-nameOutput namestring

Input/Output Ports

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