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  • Running Workflow from the Command Line

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  • Now you should configure aliases for those parameters and ports and slots that you are going to use from the command line. To do it select the Actions ‣ Configure command line parameter aliases item in the main menu or the Configure command line parameter aliases toolbar button. The following dialog appears:
  <img src="/wiki/download/attachments/2097213/configure_cmd_aliases_dialogRunning Workflow from the Command Line_1.png"/>

It contains the list of objects that corresponds to the elements of the workflow. For each object the list of parameters is available for which you can assign command line aliases. For example, assign alias in to parameter Input file (of the Read alignment element):