Task Name: fetch-sequence
Fetches a sequence from a remote database. The supported databases are accesed via alias.
| Database | Alias |
|---|---|
| NCBI Genbank (DNA) | genbank |
| NCBI Genbank (protein) | genbank-protein |
| Protein Data Bank | pdb |
| SwissProt | swissprot |
| Uniprot | uniprot |
Parameters:
db — database alias to read from. [String, Required]
id — semicolon-separated list of resource IDs in the database. [String, Required]
save-dir — directory to store sequence files loaded from the database. [String, Optional]
Example:
| Code Block |
|---|
ugene fetch-sequence --db=PDB --id=3INS;1CRN |