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Specify integrated external tools in the installed package
The Most of the external tools (if available on the target operating system) are provided installed by default in the Online Installer, Full and NGS UGENE packages.
One can specify the tools manually:
- Download the tools executables, see links on the "Download UGENE and components" pagethe web page http://ugene.net/download-all.html:
- Configure the tools in UGENE: open the UGENE Application Settings dialog, select the "External Tools" page and specify the external tools executables.
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See the list of the currently integrated external tools, information about their availability on different operating systems and version included into the corresponding External Tools Package in the table below.
External tool | Windows (64-bit) |
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Windows (32-bit) | -bit)Linux (32N/A | N/A | 2.20.12.20.1 | 2.2.26 | 2.2.26 | 2.2.26 | 2.2.26 | 2.2.26 | BLAST2.2.30 | 2.2.300.12.71.0.0 | 1.02.2.1.00.7.12 | 0.7.12 | 0.7.12 | 0.7.12 | 0.7.12 |
CAP3 | 12/21/07 | 12/21/07 | 12/21/07 |
12/21/07 | 12/21/07 | 1.0.2N/A | N/A | N/A | 1.2.4 (UGENE-customized) | 1.2.4 (UGENE-customized) |
N/A | 1.2.1 | 1.2.1 | 2.12.1 | ConductGO | Version not specified | Version not specified | Version not specified |
Version not specified | N/A | 0.1.0N/AN/AN/A | 1.7.11.7.1 | N/A | N/A | 0.11.2 | 0.11.2 | 0.11.2 | 0.11.2 | 0.11.2 |
JRE (java) |
1.8.0N/A | 3.1b2 | 3.1b2 | N/AN/A | 1.4.2 | N/A | 2122122127.212 | 7.212 | MetaPhlAn2 | N/A450 |
MetaPhlAn2 | N/A | 2.0.0 | 2.0.0 |
N/A | 3.2.33.2.3 | 1.02N/A5.24.0 | N/A20120412 | 20120412 | 20120412 | 20120412 | 20120412 |
python | 2.7.5 | 2.7.5 | 2.7.5 |
2.7.5 | 2.7.5 | Rscript | R is not included into the External Tools Packages. However, it may be installed using the UGENE Online Installer package. |
samtools |
0.1.19 | 0.1.191.01N/A | 4.3i | 4.3i | N/AN/A |
Spidey | Version not specified |
Version not specified | Version not specified | Version not specified |
StringTie | N/A |
N/A | N/A | 8.99 | 11.00 | N/AN/A | 0.38 | 0.38 | 0.1.12b0.1.12b | N/A | N/A | Version not specified | Version not specified |
N/A