To build BWA index select the Tools ‣ NGS data analysis ‣ Build index for reads mapping item in the main menu. The Build Index dialog appears. Set the Align the Map short reads method parameter to BWA.
...
| HTML |
|---|
<center>
<br>
<img src="/wiki/download/attachments/4227717/Building Index for 65930872/BWA.png"/>
<br>
</center> |
...