Child pages
  • Write Alignment Element

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Parameters in GUI

ParameterDescriptionDefault value
Data storagePlace to store workflow results: local file system or a database. 
Document formatFormat of the output file.clustal
Output file (required)Location of the output data file. If this parameter is set, then the “Location” slot is not taken into account. 
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).RenameDocument formatFormat of the output file.clustal

Parameters in Workflow File

Type: write-msa

ParameterParameter in the GUIType
data-storageData storagestring
document-formatDocument format

string

Available values are:

  • clustal
  • mega
  • msf
  • sam
  • srfasta
  • stockholm
url-outOutput filestring
write-modeExisting file

numeric

Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename
document-formatDocument format

string

Available values are:

  • clustal
  • mega
  • msf
  • sam
  • srfasta
  • stockholm

Input/Output Ports

The element has 1 input port:

Name in GUI: Multiple sequence alignment

Name in Workflow File: in-msa

Slots:

Slot In GUISlot in Workflow FileType
MSAmsamsa
Locationurlstring