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  • Opening BioMart data in UGENE by ID

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Let’s open web site:

HTML
<center>
     <br>
     <img src="/wiki/download/attachments/4227832/Opening BioMart data in UGEBE by ID.png"/>
     <br>
</center>

Click, for example, on the Proceed to Bio Portal link. The following page will appear:

HTML
<center>
     <br>
     <img src="/wiki/download/attachments/4227832/Opening BioMart data in UGEBE by ID_1.png"/>
     <br>
</center>

Notice that an example Ensembl ID below the search bar is highlighted (it has a light blue background).

Current version of the UGENE extension allows detecting the following types of identification numbers:

  1. Ensemble Gene ID
  2. Ensembl Protein ID
  3. PDB ID

Right-click on the ID and select Open in UGENE item in the context menu:

HTML
<center>
     <br>
     <img src="/wiki/download/attachments/4227832/Opening BioMart data in UGEBE by ID_2.png"/>
     <br>
</center>

The sequence with the selected ID will be opened in UGENE.