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• Select Tools –> Workflow Designer in the main menu.

  Result: The Workflow Designer window appears.

• On the Elements tab of the Palette find the Read alignment element. It is located in the Data sources group and drag it to the Scene.

  Result: The element is shown on the Scene.Image Modified

• Repeat the previous step for the Write Alignment element from the Data sinks group and for the Align with MUSCLE element from the Multiple sequence alignment group.

  Result: All three elements are on the Scene.

• Connect the elements:

  • Drag an arrow from the output port of the Read alignment element to the Align with MUSCLE element.
  • Drag an arrow from the output port of the Align with MUSCLE element to the Write alignment element.

  Result: The elements are connected with arrows.

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