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| Parameter | Description | Default value |
|---|---|---|
| Output directory | Select an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file. | Input file |
| Custom directory | Specify the output directory. | |
| Output file name | A name of an output file. If default of empty value is provided the output name is the name of the first file with additional extention. | |
| Quality threshold | Quality threshold for trimming. | 30 |
| Min Length | Too short reads are discarded by the filter. | 0 |
| Trim both ends | Trim the both ends of a read or not. Usually, you need to set True for Sanger sequencing and False for NGS | True |
Parameters in Workflow File
Type: QualityTrim
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| out-mode | Output directory | numeric |
| custom-dir | Custom directory | string |
| out-name | Output file name | string |
| qual-id | Quality threshold | numeric |
| len-id | Min Length | numeric |
| both-ends | Trim both ends | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input File
Name in Workflow File: in-file
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Source URL | url | string |
And 1 output port:
Name in GUI: Output File
Name in Workflow File: out-file
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Source URL | url | string |