- Creating, editing and annotating nucleic acid and protein sequences
- Creating, editing, aligning msamultiple sequence alignments
- Aligning, browsing and analyzing short reads assemblies
- 3D structure viewer
- Building and viewing phylogenetic trees
- Running many dozens algorithms for analyzinganalyzing your data
- Combining various Importing and exporting data into different file formats
- Combining algorithms into custom workflows with UGENE Workflow Designer
| - Visual and interactive genome browsing including circular DNA, RNA and protein sequence navigation
- Circular plasmid view
- Dotplots
- Multiple sequence alignment editor with integrated tree viewer
- Chromatograms visualizationeditor
- 3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support
- Phylogenetic tree viewer
- Assembly browser
| - UGENE actively participates in different customization projects: grants, custom tools/pipelines.
- Can be used for education purposes in schools and universities.
- Features to be included into the next release are initiated by users
- UGENE team is ready for collaboration in related projects, both free and commercial
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