- Creating, editing and annotating nucleic acid of nucleotide and protein sequences
- Creating, editing, aligning of multiple sequence alignments
- AligningAssembling, browsing and analyzing of short reads assemblies
- 3D structure viewer
- Building and viewing visualizing of phylogenetic trees
- Running dozens of algorithms for analyzing your data analyzing
- Importing and exporting data into different file bio-formats
- Combining algorithms into custom workflows with UGENE Workflow Designer
| - Visual and interactive DNA, RNA and protein sequence navigation
- Circular plasmid viewvisualization
- Dotplots
- Multiple sequence alignment editor with integrated tree viewer
- Chromatograms editor
- 3D viewer for files in PDB and MMDB formats
- Phylogenetic tree viewer
- Assembly browser
| - UGENE actively participates in different customization projects: grants, custom tools/pipelines.
- Can be used for education purposes in schools and universities.
- Features to be included into in the next release are initiated by users
- UGENE team is ready for collaboration in related projects, both free and commercial
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