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Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Offset | Works like gap extension penalty. | 0 |
Gap open penalty | Gap open penalty. | 1.53 |
Max iteration | Maximum number of iterative refinement. | 0 |
Tool path (default) | Path to the ClustalW tool. The default path can be set in the UGENE application settings. | default |
Temporary directory | Directory to store temporary files. | default |
Parameters in Schema File
Type: mafft
Parameter | Parameter in the GUI | Type |
---|---|---|
gap-ext-penalty | Offset | numeric |
gap-open-penalty | Gap open penalty | numeric |
iterations-max-num | Max iteration | numeric |
path | Tool path | string |
temp-dir | Temporary directory | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input MSA
Name in Schema File: in-msa
Slots:
Slot In GUI | Slot in Schema File | Type |
---|---|---|
MSA | msa | msa |
And 1 output port:
Name in GUI: Multiple sequence alignment
Name in Schema File: out-msa
Slots:
Slot In GUI | Slot in Schema File | Type |
---|---|---|
MSA | msa | msa |