Reads sequences and annotations if any from local or remote files.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Input files | Semicolon-separated list of datasets to the input files. | |
| Mode | If the file contains more than one sequence, “split” mode sends them as is to output, while “merge” appends all the sequences and outputs the merged sequence. | Split |
| Merging gap | In the “merge” mode, inserts the specified number of gaps between the original sequences. This is helpful e.g. to avoid finding false positives at the merge boundaries. | 10 |
| Sequence count limit | Split mode only. Read only first N sequences from each file. Set 0 value for reading all sequences. | 0 |
| Accession filter | Only reports a sequence with the specified accession (id). |
Parameters in Workflow File
Type: read-sequence
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| url-in | Input files | string |
| mode | Mode | numeric Available values are:
|
| merge-gap | Merging gap | numeric |
| sequence-count-limit | Sequence count limit | numeric |
| accept-accession | Accession filter | string |
Input/Output Ports
The element has 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Set of annotations | annotations | annotation-table |
| Source URL | url | string |