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  • Converting MSA
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Task Name: convert-msa

Converts a multiple sequence alignment file from one format to another.


in — input multiple sequence alignment file. [String, Required]

out — name of the output file. [String, Required]

format — format of the output file. [String, Optional]

The following values are available:

    • clustal (default)
    • fasta
    • mega
    • msf
    • nexus
    • phylip-interleaved
    • phylip-sequential
    • stockholm


ugene convert-msa --in=CBS.sto --out=CBS --format=msf
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