Builds a HMM3 profile from a multiple sequence alignment. The HMM3 profile is a statistical model which captures position-specific information about how conserved each column of the alignment is, and which residues are likely.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Random seed | Random generator seed. 0 - means that one-time arbitrary seed will be used. | 0 |
Parameters in Workflow File
Type: hmm3-build
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| seed | Random seed | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input MSA
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
And 1 output port:
Name in GUI: HMM3 profile
Name in Workflow File: out-hmm3
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| HMM profile | hmm3-profile | hmm3-profile |