Finds groups of specified annotations in each supplied set of annotations, stores found regions as annotations.
Element type: collocated-annotation-search
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Result type | Copy original annotations or annotate found regions with new ones. | Create new annotations | result-type | string |
| Result annotation (required) | Name of the result annotation to mark found collocations. | misc_feature | result-name | string |
| Include boundaries | Include most left and most right boundary annotations regions into result or exclude them. | True | annotations | string |
| Group of annotations (required) | List of annotation names to search. Found regions will contain all the named annotations. | include-boundary | boolean | |
| Region size | Effectively this is the maximum allowed distance between the interesting annotations in a group. | 1000 | region-size | numeric |
| Must fit into region | Specifies whether the interesting annotations should entirely fit into the specified region to form a group. | False | must-fit | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input data
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Set of annotations | annotations | annotation-table-list |
And 1 output port:
Name in GUI: Group annotations
Name in Workflow File: out-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |