Builds a HMM3 profile from a multiple sequence alignment. The HMM3 profile is a statistical model which captures position-specific information about how conserved each column of the alignment is, and which residues are likely.
Element type: hmm3-build
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Random seed | Random generator seed. 0 - means that one-time arbitrary seed will be used. | 0 | seed | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input MSA
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
And 1 output port:
Name in GUI: HMM3 profile
Name in Workflow File: out-hmm3
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| HMM profile | hmm3-profile | hmm3-profile |