Extract the consensus sequence from the incoming multiple sequence alignment.
Element type: extract-msa-consensus-sequence
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Algorithm | The algorithm of consensus extracting. | algorithm | string | |
| Threshold | The threshold of the algorithm. | 100 | threshold | numeric |
| Keep gaps | Set this parameter if the result consensus must keep the gaps. | True | keep-gaps | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: in-msa
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
And 1 output port:
Name in GUI: out-sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | seq |