Task Name: hmm2-build
Builds a profile HMM using the HMMER2 tools.
Parameters:
in — semicolon-separated list of input multiple sequence alignment files. [String, Required]
out — output HMM file. [String, Required]
name — name of the profile HMM. [String, Optional, Default: “hmm_profile”]
calibrate — enables/disables calibration. [Boolean, Optional, Default: true]
seed — random seed, a non-negative integer. [Number, Optional, Default: 0]
Example:
ugene hmm2-build --in=CBS.sto --out=CBS.hmm