To apply an alignment highlighting mode, select it in the Highlighting context menu:
<center> <br> <img src="/wiki/download/attachments/16122233/Highlighting Alignment.png"/> <br> </center> |
or on the Highlighting tab of the Options Panel:
<center> <br> <img src="/wiki/download/attachments/16122233/Highlighting Alignment_1.png"/> <br> </center> |
The following modes are available:
Agreements — highlights symbols that coincide with the reference sequence.
Disagreements — highlights nucleotides that differ from the reference sequence.
To use dots instead of symbols which are not highlighted check the Use dots checkbox in the Options Panel or use the Highlighting->Use dots context menu item.
To select a reference sequence use the Set this sequence as reference context menu or Reference sequence field in the Highlighting tab of the Options Panel.
Also you can export highlighting with a help of the Export button in the Options Panel or by the Export->Export highlighted context menu item. The following dialog will appear:
<center> <br> <img src="/wiki/download/attachments/7667818/Highlighting Alignment_2.png"/> <br> </center> |
Select file to export, exported area and click on the Export button. The task report will appear in the Notifications.