Parses annotations to find any IDs and fetches corresponding sequences.

Parameters in GUI

 

ParameterDescriptionDefault value
Save file to directoryThe directory to store sequence files loaded from a database.default
NCBI databaseThe database to read from.

nucleotide

Available values are:

  • nucleotide
  • protein

 

Parameters in Schema File

Type: fetch-sequence

ParameterParameter in the GUIType
save-dirSave file to directorystring
databaseNCBI databasestring

 

The element has 1 input port:

Name in GUI: Input annotations

Name in Schema File: in-annotations

Slots:

Slot In GUISlot in Schema FileType
Set of annotationsannotationsannotation-table

 

And 1 output port:

Name in GUI: Sequence

Name in Schema File: out-sequence

Slots:

Slot In GUISlot in Schema FileType
Set of annotationsannotationsannotation-table
Sequencesequencesequence