When the element is used the input nucleotide sequence is translated into 6 amino sequences. The translated sequences are used to query the NCBI Conserved Domain Database (CDD).
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Annotate As | Name of the result annotations. | CDD result |
| Expected value | It is also called E-value. Describes the number of hits one can “expect” to see by chance when searching a database of a particular size. | 10 |
| Min length | Minimum result length. | 50bp |
| Max length | Maximum result length. | 5000bp |
| Pattern | Filters the result annotations: the qualifier value must contain the specified pattern value. | No default value. |
Parameters in Schema File
Type: CDD
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| key | Annotate As | string |
| evalue | Expected value | numeric |
| min-length | Min length | numeric |
| max-length | Max length | numeric |
| pattern | Pattern | string |