Extract the consensus sequence from the incoming assembly.
Element type: extract-consensus
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Algorithm | The algorithm of consensus extracting. | Default | algorithm | string |
| Keep gaps | Set this parameter if the result consensus must keep the gaps. | True | keep-gaps | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: in-assembly
Name in Workflow File: in-assembly
Slots:
Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
Assembly data | assembly | assembly |
And 1 outut port:
Name in GUI: out-sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | string |