Extract the coverage and bases count from the incoming assembly.
Element type: extract-assembly-coverage
Parameters
| Output file | Location of output data file. If this attribute is set, slot "Location" in port will not be used. | assembly_coverage.txt | url-out | string |
| Export | Data type to export. | coverage | export-type | string |
| Treshold | The minimum coverage value to export. | 1 | threshold | numeric |
Parameter | Description | Default value | Parameter in Workflow File | Type |
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Input/Output Ports
The element has 1 input port:
Name in GUI: in-assembly
Name in Workflow File: in-assembly
Slots:
Assembly data | assembly | assembly |
Slot In GUI | Slot in Workflow File | Type |
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